sample	chr	startpos	endpos	nMajor	nMinor
TCGA-BF-AAP6	1	61735	121741181	1	1
TCGA-BF-AAP6	1	143285278	248930189	3	1
TCGA-BF-AAP6	2	12784	169279232	1	1
TCGA-BF-AAP6	2	169281996	169469315	2	1
TCGA-BF-AAP6	2	169470243	199019202	1	1
TCGA-BF-AAP6	2	199021664	199867048	1	0
TCGA-BF-AAP6	2	199881503	242147305	1	1
TCGA-BF-AAP6	3	18667	198169247	1	1
TCGA-BF-AAP6	4	12281	179668681	1	1
TCGA-BF-AAP6	4	179674944	190106768	1	0
TCGA-BF-AAP6	5	15532	188604	1	0
TCGA-BF-AAP6	5	189890	531110	2	1
TCGA-BF-AAP6	5	551126	951567	1	0
TCGA-BF-AAP6	5	953074	1650231	2	1
TCGA-BF-AAP6	5	1656002	2063565	1	0
TCGA-BF-AAP6	5	2069417	2150271	2	1
TCGA-BF-AAP6	5	2157372	2313513	1	0
TCGA-BF-AAP6	5	2318564	3200814	2	1
TCGA-BF-AAP6	5	3201619	4751534	4	1
TCGA-BF-AAP6	5	4755109	5154345	1	0
TCGA-BF-AAP6	5	5154908	5828571	1	1
TCGA-BF-AAP6	5	5829002	5872055	3	1
TCGA-BF-AAP6	5	5872246	6500082	1	1
TCGA-BF-AAP6	5	6502041	7746841	1	0
TCGA-BF-AAP6	5	7750252	8483051	2	1
TCGA-BF-AAP6	5	8489339	8610828	4	1
TCGA-BF-AAP6	5	8614155	11007557	2	1
TCGA-BF-AAP6	5	11009125	20594122	1	1
TCGA-BF-AAP6	5	20594323	27480368	1	0
TCGA-BF-AAP6	5	27486319	28367056	1	1
TCGA-BF-AAP6	5	28367189	30466702	1	0
TCGA-BF-AAP6	5	30467795	30795248	1	1
TCGA-BF-AAP6	5	30799414	30841601	2	1
TCGA-BF-AAP6	5	30841869	31135888	1	1
TCGA-BF-AAP6	5	31141614	33525259	1	0
TCGA-BF-AAP6	5	33525378	34282862	1	1
TCGA-BF-AAP6	5	34289219	34909491	2	1
TCGA-BF-AAP6	5	34909796	50136997	1	1
TCGA-BF-AAP6	5	50146124	50610524	1	0
TCGA-BF-AAP6	5	50613722	112717300	1	1
TCGA-BF-AAP6	5	112718850	112791287	1	0
TCGA-BF-AAP6	5	112791472	113044930	2	1
TCGA-BF-AAP6	5	113047578	113096858	1	0
TCGA-BF-AAP6	5	113096983	113136810	2	1
TCGA-BF-AAP6	5	113147353	122680896	1	0
TCGA-BF-AAP6	5	122681298	123146811	2	1
TCGA-BF-AAP6	5	123147448	128576262	1	0
TCGA-BF-AAP6	5	128578571	128782358	2	0
TCGA-BF-AAP6	5	128782395	128977146	2	1
TCGA-BF-AAP6	5	128981532	181363319	1	0
TCGA-BF-AAP6	6	149661	1083276	1	1
TCGA-BF-AAP6	6	1083589	1428128	1	0
TCGA-BF-AAP6	6	1437889	9923862	1	1
TCGA-BF-AAP6	6	9924595	10305826	1	0
TCGA-BF-AAP6	6	10308361	13138045	1	1
TCGA-BF-AAP6	6	13140422	170741917	1	0
TCGA-BF-AAP6	7	43259	159334314	2	1
TCGA-BF-AAP6	8	81254	68231601	1	1
TCGA-BF-AAP6	8	68233111	68902626	3	1
TCGA-BF-AAP6	8	68907506	69522629	1	1
TCGA-BF-AAP6	8	69523390	69675559	3	1
TCGA-BF-AAP6	8	69678067	71140574	2	1
TCGA-BF-AAP6	8	71141765	72071053	3	1
TCGA-BF-AAP6	8	72074077	72282806	2	1
TCGA-BF-AAP6	8	72284812	72746545	3	1
TCGA-BF-AAP6	8	72746684	72811116	1	1
TCGA-BF-AAP6	8	72811739	72871517	4	1
TCGA-BF-AAP6	8	72871963	77149968	1	1
TCGA-BF-AAP6	8	77150464	127774588	2	1
TCGA-BF-AAP6	8	127776390	129194744	1	1
TCGA-BF-AAP6	8	129195432	145072769	2	1
TCGA-BF-AAP6	9	46587	42995504	1	1
TCGA-BF-AAP6	9	60840363	104104122	1	0
TCGA-BF-AAP6	9	104105145	104741053	1	1
TCGA-BF-AAP6	9	104741088	104868614	1	0
TCGA-BF-AAP6	9	104868630	105107532	1	1
TCGA-BF-AAP6	9	105107553	107892410	1	0
TCGA-BF-AAP6	9	107894986	108078737	1	1
TCGA-BF-AAP6	9	108079312	110798034	1	0
TCGA-BF-AAP6	9	110798188	111108351	1	1
TCGA-BF-AAP6	9	111110500	111534035	1	0
TCGA-BF-AAP6	9	111536913	111865190	1	1
TCGA-BF-AAP6	9	111865238	112266408	1	0
TCGA-BF-AAP6	9	112266565	113054876	1	1
TCGA-BF-AAP6	9	113057379	113264898	1	0
TCGA-BF-AAP6	9	113268382	113451894	1	1
TCGA-BF-AAP6	9	113454133	113948606	1	0
TCGA-BF-AAP6	9	113948712	114484887	1	1
TCGA-BF-AAP6	9	114485307	114614186	1	0
TCGA-BF-AAP6	9	114619483	118501689	1	1
TCGA-BF-AAP6	9	118502667	118556193	1	0
TCGA-BF-AAP6	9	118556569	123019623	1	1
TCGA-BF-AAP6	9	123020343	123221705	1	0
TCGA-BF-AAP6	9	123222065	124358875	1	1
TCGA-BF-AAP6	9	124359027	126213498	1	0
TCGA-BF-AAP6	9	126213512	126868709	1	1
TCGA-BF-AAP6	9	126869424	127572625	1	0
TCGA-BF-AAP6	9	127573139	128120698	1	1
TCGA-BF-AAP6	9	128130666	129130388	1	0
TCGA-BF-AAP6	9	129130693	129287050	1	1
TCGA-BF-AAP6	9	129287762	138200944	1	0
TCGA-BF-AAP6	10	26823	133769379	1	0
TCGA-BF-AAP6	11	198572	42631890	1	1
TCGA-BF-AAP6	11	42632233	135074876	2	1
TCGA-BF-AAP6	12	51460	133201603	1	1
TCGA-BF-AAP6	13	18452809	98488954	2	1
TCGA-BF-AAP6	13	98489018	98550791	5	1
TCGA-BF-AAP6	13	98552947	114342922	2	1
TCGA-BF-AAP6	14	18225647	21940575	1	1
TCGA-BF-AAP6	14	21940619	22519593	2	1
TCGA-BF-AAP6	14	22524749	106877229	1	1
TCGA-BF-AAP6	15	19811075	55157286	1	0
TCGA-BF-AAP6	15	55158077	101928837	1	1
TCGA-BF-AAP6	16	10777	90221127	1	1
TCGA-BF-AAP6	17	150733	83090856	1	1
TCGA-BF-AAP6	18	48133	80257174	1	1
TCGA-BF-AAP6	19	90910	58586487	1	1
TCGA-BF-AAP6	20	80664	64324800	2	1
TCGA-BF-AAP6	21	10336543	13293514	1	0
TCGA-BF-AAP6	21	13293603	30227594	1	1
TCGA-BF-AAP6	21	30227750	30308167	1	0
TCGA-BF-AAP6	21	30311217	46677045	1	1
TCGA-BF-AAP6	22	15294545	50796027	1	1
TCGA-BF-AAP6	X	251810	2785350	1	1
TCGA-BF-AAP6	X	2785592	155699647	1	0
TCGA-BF-AAP6	X	155699837	156004181	1	1
