045d14fdabfa11ad7d4804beb2b2785a *DESCRIPTION
2cb71b510559aa890a85516139ea5a2e *NAMESPACE
a76559b7695456b254c0153820c08f01 *NEWS
c2cb52cd454619183a014d289a426c45 *R/RcppExports.R
4084f75187287f96e945d206c3b794c7 *R/calculate_mu.R
0c81f100d1355fcbda56fe48d196e772 *R/estimate_betas.R
81a94c9fb0d1df5f90be2906e9972be0 *R/estimate_size_factors.R
dc73f20adc4914e06067fba2ade34cb4 *R/eval_with.R
1b41a5c0870cba2a1bb584429006e4b2 *R/glmGamPoi-package.R
13dabfd83276df2facce32117cf6d4a5 *R/glm_gp.R
d75259cd0db08ff33318fa49a93a93e2 *R/glm_gp_impl.R
7822bb68f890c4d472698fe0a5e7220d *R/loc_median_fit.R
e2a26694060d56780274862de19ccb87 *R/make_dataset.R
d0747db4d70e7c83f2fedecf5149bbdd *R/overdispersion.R
a48ad6ce6de51809a0420841198d2118 *R/parse_contrast.R
084e7edc4e48192897af77629c92503a *R/predict.R
f3a69b7b5c9e16051cd0f7699e3ea74e *R/print_model.R
484f49944d81c345e18221f7bcd813cd *R/pseudobulk.R
ccd73a09eda5a57c4b4b822bb2ce9f37 *R/quasi_gamma_poisson_shrinkage.R
d6a37d38016f9f13297d5e45a941fbeb *R/residuals.R
35b0496134767b5aabaf0f75f9036d46 *R/test_de.R
7699c36a8de68b79abf20204b2cad16a *R/test_pseudobulk.R
289e51bf5e164966d5ef26bd2be5c41e *R/utils.R
71a5ef23207d069237ae8ef2b150120e *README.md
1b8783acfaf52c0b397de32162573852 *build/vignette.rds
ec45324d01ed2e4cdda526d235d5604e *inst/CITATION
2fa93d6d261b11648b4496db1a97ad3f *inst/doc/glmGamPoi.R
6496a14af3e84ae7f0ba7de73b549f09 *inst/doc/glmGamPoi.Rmd
aa6cbe4db90b4042b1ef2b4d58c89fa1 *inst/doc/glmGamPoi.html
62905919657421da56c8968968e7ab6f *inst/doc/pseudobulk.R
ee322e8cd3dba473fed602ccfed9feea *inst/doc/pseudobulk.Rmd
759f0b168386bed3f7ebce448bb0daff *inst/doc/pseudobulk.html
23eafb3be0b4567c56e9e4b495e940dc *inst/include/deviance.h
111f1a69a0e5793fb83d903a77e10d56 *inst/include/fisher_scoring_steps.h
7c3d598204b0b03bc1b091e76f4f5a1f *man/as.list.glmGamPoi.Rd
ff0702c2ee121fa83bfcd191b7a594f7 *man/estimate_betas_fisher_scoring.Rd
d7cdc52dd17291fa15299446429899a2 *man/estimate_betas_group_wise.Rd
8f7fdb1ec66bcf9edaf557834f089e7a *man/estimate_betas_roughly.Rd
b36a4e95a0ceab0116817915136dabff *man/estimate_betas_roughly_group_wise.Rd
56c4ab7e921fc6403c1ce4d86b74ef34 *man/estimate_size_factors.Rd
bda9a3a042652d90189ff351661e9450 *man/figures/README-coefficientComparison-1.png
f03ec032b9698cfca3bb2b9907019f88 *man/figures/README-make_volcano_plot-1.png
017f176537dace790ac18a93fd372771 *man/figures/README-plot_marker_genes-1.png
93df04ba1add7497df5dd2e621b27439 *man/figures/logo.svg
1d279454976933553ec630f8b85c0f02 *man/format_matrix.Rd
f8e32fe95858a3c85c8441c1609bf30b *man/glm_gp.Rd
a857d23a0d388c723c277ad0be521257 *man/glm_gp_impl.Rd
3b2bffa8bbfa817e26c6e4a4b4027ee7 *man/loc_median_fit.Rd
48e680208af210df55799587180e0ebf *man/overdispersion_mle.Rd
61febc129261da1052dde21095107d66 *man/overdispersion_shrinkage.Rd
ca870c9dc7c6163f2397cedc19837962 *man/predict.glmGamPoi.Rd
30724182f717954679432acda589805b *man/print.glmGamPoi.Rd
071d9bb6679ed9cdd3ac1af4032b56a4 *man/pseudobulk.Rd
31834e5cd27d79743f9536e8f8882008 *man/residuals.glmGamPoi.Rd
328df07d99234d27ab2b533a4e517521 *man/solve_lm_for_A.Rd
69f366c34e1869b86e6709e3d3c33054 *man/test_de.Rd
4ae02f7a55e9af8549d56b2deb59b865 *man/variance_prior.Rd
8c9bd17c60f5978016721ed671282816 *man/vars.Rd
1d19cd8b0b9716bb0099bf440d8845f0 *src/Makevars
18be4fdc16e5e2a8bf061530c094202e *src/Makevars.win
8b077994a4a1b9e73e4e7606325a0895 *src/RcppExports.cpp
f491afd414dc7a1248cabdc9cbceaac8 *src/beta_estimation.cpp
d8ee8ed51d3ec481510ce385e9564468 *src/deviance.cpp
32e48e7eac83effb7ec91d1cd9233cf9 *src/overdispersion.cpp
bb22a58adf6c7cedb506707129f4d27d *src/utils.cpp
02759ddcfe1301e4d200af432942abf7 *tests/testthat.R
0d246e017ae58934d9a229b1f66147f7 *tests/testthat/check-derivatives.R
49357902dc849d6a335a73831cee38c3 *tests/testthat/helper-architecture.R
6629bbb46202e55d05ed48b3903f9754 *tests/testthat/setup.R
370dd203af26b3d6df7f8c182aea189e *tests/testthat/test-calculate_mu.R
cf18708fbb34268e94ad6b711ee9673f *tests/testthat/test-estimate_betas.R
aa3eb726d3761d945000d54a9cff5dee *tests/testthat/test-eval_with.R
9a9f32af2d8a36a0f1f23d118d3014a4 *tests/testthat/test-glm_gp.R
53aa150176b681f1717a9189fdfa25e6 *tests/testthat/test-loc_median_fit.R
3351591efc80a4c6168e39fd6610612a *tests/testthat/test-overdispersion.R
119789189d73c4b4b80ccba896998ad4 *tests/testthat/test-parse_contrast.R
c1cb81cbfe85cfcbe348127f6d3a382a *tests/testthat/test-predict.R
6cc79f5a2ccb123489816de4dc4157cd *tests/testthat/test-printing.R
1b92c167b61f45ae64d06e1c8ed65353 *tests/testthat/test-pseudobulk.R
d927320194a0900cf9dc091136cc66fd *tests/testthat/test-residuals.R
63f0fa9b5f0b3d7e9b346ea810d5990d *tests/testthat/test-shrinkage.R
32b530033a54ed5cc85d3638029baa06 *tests/testthat/test-size_factors.R
256b6934ca803227db83d6e5b275a745 *tests/testthat/test-solve_helper.R
1eec2c700ace278b8dff2ab36b6c4ea9 *tests/testthat/test-test_de.R
454bda49669d38cf753c87cd8f0a985b *tests/testthat/test-utils.R
6496a14af3e84ae7f0ba7de73b549f09 *vignettes/glmGamPoi.Rmd
abc7af9d6e663c6ae0ed23c7831e5b3c *vignettes/img/kang_data_overview.png
5f82ce1d8e3478029b80f758ea8ac1dd *vignettes/img/kang_data_overview.pptx
1c6b8bca15e27623d02a185c78a64d37 *vignettes/man/figures/README-coefficientComparison-1.png
ee322e8cd3dba473fed602ccfed9feea *vignettes/pseudobulk.Rmd
